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Your title indicates what your problem is.
Packet loss resulting in re-transmissions .
A solution is to fix the root cause of the packet loss (wherever it occurs).
To identify where the packet loss occurs and why you/we would need to see captures at multiple trace points.
If that's impossibly or too much of a pain ... you should probably just chose your second option.
If you can upload your capture to dropbox etc we could give it a try to provide some better answer.
Regards Matthias
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