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I have finally found the solution for this, maybe someone else might need it in the future, tshark was finally able to use my .proto files when I used the preference protobuf_search_paths:
the cammand is tshark ... -o uat:protobuf_search_paths: "/path/to/protofolder","TRUE"
don't forget to escape special characters like so otherwise it won't work :
"uat:protobuf_search_paths:\"/path/to/protofolde\",\"TRUE\""